How to access divisions in master database
You see a locus map (just like a reference map in
Map viewer) once you click 'nucleic acid' or 'amino acid' phrase of
'Show prepared divisios' section.
There are two modes of the page, java mode (see 1.)
and image mode (see 2.).
This is a default (and an initial) mode. In this mode, you access prepared
divisions by the following operation.
1.1. menu bar
It locates on the top of the viewer. Items of the menu bar, which extracts
a data set or changes drawing style of the map, are changed by the most left
menu. The followings are functions of the items.
1.1.1. data menu
You can access the speified data of the specified locus. If you click one of
the filled boxes of loci, the box darkens and it means that the locus is
chosen. In the case of a circular genome, loci are drawn by thick arcs, and
an arc is enclosed by a red fin-shape if you click one.
Then you can see the specified type of data by clicking the corresponding
button in the menu.
- tree : phylogenetic tree (see also Tree viewer)
- alignment : multiple alignment
- matrix : genetic distance matrix
- sequence : nucleic or amino acids sequences
- entry : full annotated data (entries)
1.1.2. font menu
You can change a font (face, style, and size) which is used to draw
loci names and scales in the map.
1.1.3. redraw menu
You can force to redraw the graphic by selecting this item.
1.2. map graphic
At the center of the page a map of loci is displayed by almost the same
style of reference map in
Map viewer .
1.3. links to full-length genome division data
Links to data of full-length genome division are prepared below the
map graphic. Available data types are same as those in
data menu .
In this mode, map is displayed by a JPEG image file instead of JAVA.
You can use the mode by clicking '[image mode]' at the bottom of the java-mode
In this mode, the map graphic does not have a function. Instead, a table of
links for each data type for each locus is displayed below the map graphic.
Available data types are same as those in data menu
in java mode.